lolEmbarrassing lie.
I'm pretty sure humans evolved in parallel. There are bunches of humans just like there are bunches of monkeys.
The Hox genes are about as close as we get to defining what a species is. Hox genes are the body plan. Like, muscle and bone structure that allows us to walk upright.
What we find is these genes are organized in clusters, heavily conserved within clusters but not so conserved between clusters. However there are very notable exceptions, a famous one is RHOX-F2 in monkeys. One end of is highly conserved, and the other end varies greatly. It seems to be mutating preferentially at one end.
Evolutionary Conservation of Regulatory Elements in Vertebrate Hox Gene Clusters - PMC
Comparisons of DNA sequences among evolutionarily distantly related genomes permit identification of conserved functional regions in noncoding DNA. Hox genes are highly conserved in vertebrates, occur in clusters, and are uninterrupted by other ...
Hox genes code for proteins that bind to other genes and regulate them. They turn the other genes on and off at specific times. For instance how long should a bone grow? A normal human ulna or radius is maybe 12", it grows till it stops. When the Hox gene stops making protein the bone stops growing.
In the case of the vertebral cage and spinal cord there are "segments", and there the dynamics are different - segments are examples of the limit cycles they talk about in the paper in the previous post. So in this case there must be damping on the cycle because it stops eventually, our body structure grows little tailbones before the segmentation stops completely.
There are chemical gradients that control the gene and transcription dynamics. During development a cell reads these gradients to find out who it is and where it is relative to the rest of the body plan. As development proceeds the gradients get more localized. The "shape" that occurs in the meantime influences subsequent development. If you mess with gradients or mutate one of the Hox genes weird things happen to the body plan, like you get frogs with two heads and stuff like that.
In the human rib cage, how does a developing embryo know to place the heart "here", between the lungs and at a more or less well defined vertebral segment? At some point a stem cell divides and one of the progeny becomes a heart. The timing between that, and the growth of the spinal column, is a result of Hox gene dynamics.
The Hox genes get re-used in different ways once the heart cell is defined. In humans there's only about 40 known Hox genes, but 2^40 is a very large number for combinatorial dynamics. Hox stands for "homeobox" which is a conserved sequence of about 60 amino acids that binds to DNA. You can see lots of Hox gene sequences here:
and the description of the database is here:
HOX Pro: a specialized database for clusters and networks of homeobox genes - PMC
It is now clear that the homeobox motif is well conserved across metazoan phyla. It has been established experimentally that a subset of genes containing this motif plays key roles in the orchestration of gene expression during development. Auto- ...
