Only an idiot would claim it has no effect on Gov't. Ironically, you pwn yourself in your very next paragraph. Clearly you believe that Churches openly supporting Obama effect gov't.
And yes, that means you can remove tax exempt status from Churches that openly supported Obama, etc.
You are wrong. Churches have the same right as citizens, they can participate in the democratic process. The 1st Amendment protects them from Government interference. A church and its leaders can participate in the election process any legal way they chose. This includes advice their followers to vote as the church feels is correct. This includes not providing services to its followers if they do not follow the edicts of the church.
Government has no right to get involved at all. The 1st Amendment and the so called Separation of Church and State are to protect churches FROM the Government, not the other way around. You can not deny religions the right to participate in the democratic process.