Answer the question - are you arguing against freedom of religion? In other words, is "tolerance" in western countries reserved for only approved religions (assuming all are acting lawfully)?
As far as freedoms - that is less dependent on religion than it is on many other factors such as governance, stability, education, culture etc. Business Insider posted a list of "Least Free" countries, and it includes non-Islamic as well as Islamic majority countries:
The 15 least free countries in the world I think anytime religion begins to interfere with government freedoms begin to diminish for minorities - I'm an advocate of strict seperation between religion and governance.
If Islam is "all ABOUT" intolerance that is not universally shared among it's adherents who's views vary depending on where in the world they live.