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In the waning days of the Obama administration, James R. Clapper Jr., who was the director of national intelligence, and John Brennan, the CIA director at the time, shared Yates’s concerns and concurred with her recommendation to inform the Trump White House. They feared that “Flynn had put himself in a compromising position” and thought that Pence had a right to know that he had been misled, according to one of the officials, who, like others, spoke on the condition of anonymity to discuss intelligence matters.
A senior Trump administration official said before Flynn’s resignation that the White House was aware of the matter, adding that “we’ve been working on this for weeks.”
The current and former officials said that although they believed that Pence was misled about the contents of Flynn’s communications with the Russian ambassador, they couldn’t rule out that Flynn was acting with the knowledge of others in the transition.