Actually not.
Two Amendment can't co-exist, one seeking to 'nullify' a provision of the other.
The latter trumps the former. Take a look at the 21st in relation to the 18th. Any amendment that exists can be overriden by a later amendment as can any portion of the constitution. And there are no limits on what amendments can do, what rights they can strip away. They are the sole method of modification of our system of government that has no check nor balance.
And why they are so hard to implement.
That's why the Second Amendment doesn't 'authorize' citizens to 'take up arms' against the Federal government should those citizens subjectively perceive the Federal government as 'tyrannical,' as to do so would deny the people their First Amendment right to first petition the government for a redress of grievances.
The 2nd amendment could be repealed with the appropriate amendment. There's nothing that prevents it constitutionally. Though plenty that would prevent it practically. Namely, such an amendment would never pass.
But as the issue we're discussing is the scope and power of passed amendments, the point stands: an amendment can change anything in the US constitution. There are no restrictions. There is no power that couldn't be stripped, no process that couldn't be modified, no office that couldn't be eliminated, no right that couldn't be abrogated. Amendments are the ultimate trump card.