*facepalm*
1) With the same gene? You said it was the absence of a gene.
2) If the effect resulted from the manipulation of the genome, it's genetic by definition. If the gene is present and normal but inactive due to epigenetic factors, it's epigenetic by definition. (Although, in common parlance, that'd still generally be considered an extension of 'genetic')
3)If the gene is present yet damage to some structure prevents normal operation of the functions the gene normally reguilate (eg: damage to a part of the brain), then that is another matter.
This study specifically dealt with genetic changes. The changes in biochemical function that had the (more) direct effect of influencing apparent sexuality were in turn the result of genetic factors. The genetic changes are the root cause of the matter much as the squeezing of the trigger causes the hammer to move, causes the gun to fire, causes the bullet to accelerate, causes the bullet to contract and enter JKF's head, causes the transfer of inertia, causes his head to come apart, causes the brainstem to cease working (combined with exanguination) causes his heart to fail, causes him to die.
To claim the matter was caused by genetic factors yet is not genetic is to claim that a sphere is not spherical.